Variant report
| Variant | rs56177783 |
|---|---|
| Chromosome Location | chr5:108047280-108047281 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000272523 | Chromatin interaction |
| ENSG00000151422 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs55745292 | 1.00[AMR][1000 genomes] |
| rs55792714 | 1.00[AMR][1000 genomes] |
| rs55913202 | 1.00[AMR][1000 genomes] |
| rs56195269 | 1.00[AMR][1000 genomes] |
| rs56228037 | 1.00[AMR][1000 genomes] |
| rs56264243 | 1.00[AMR][1000 genomes] |
| rs56890521 | 1.00[AMR][1000 genomes] |
| rs56932426 | 1.00[AMR][1000 genomes] |
| rs58773536 | 1.00[AMR][1000 genomes] |
| rs60862365 | 1.00[AMR][1000 genomes] |
| rs60944482 | 1.00[AMR][1000 genomes] |
| rs73780541 | 1.00[AMR][1000 genomes] |
| rs73780555 | 1.00[AMR][1000 genomes] |
| rs73780557 | 1.00[AMR][1000 genomes] |
| rs73780561 | 1.00[AMR][1000 genomes] |
| rs73780569 | 1.00[AMR][1000 genomes] |
| rs73780571 | 1.00[AMR][1000 genomes] |
| rs73780573 | 1.00[AMR][1000 genomes] |
| rs73780577 | 1.00[AMR][1000 genomes] |
| rs73780580 | 1.00[AMR][1000 genomes] |
| rs73780582 | 1.00[AMR][1000 genomes] |
| rs73780584 | 1.00[AMR][1000 genomes] |
| rs73780585 | 1.00[AMR][1000 genomes] |
| rs73780586 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882689 | chr5:107595383-108299744 | Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
