Variant report

Variant	rs73780577
Chromosome Location	chr5:108135297-108135298
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55745292	1.00[AMR][1000 genomes]
rs55792714	1.00[AMR][1000 genomes]
rs55913202	1.00[AMR][1000 genomes]
rs56177783	1.00[AMR][1000 genomes]
rs56195269	1.00[AMR][1000 genomes]
rs56228037	1.00[AMR][1000 genomes]
rs56264243	1.00[AMR][1000 genomes]
rs56890521	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56932426	1.00[AMR][1000 genomes]
rs58773536	1.00[AMR][1000 genomes]
rs60862365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60944482	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780541	1.00[AMR][1000 genomes]
rs73780555	1.00[AMR][1000 genomes]
rs73780557	1.00[AMR][1000 genomes]
rs73780561	1.00[AMR][1000 genomes]
rs73780569	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780571	1.00[AMR][1000 genomes]
rs73780573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73780580	1.00[AMR][1000 genomes]
rs73780582	1.00[AMR][1000 genomes]
rs73780584	1.00[AMR][1000 genomes]
rs73780585	1.00[AMR][1000 genomes]
rs73780586	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv471039	chr5:108133967-108245089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108112600-108137200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:108117800-108138200	Weak transcription	Liver	Liver
3	chr5:108118200-108136800	Weak transcription	NHLF	lung
4	chr5:108120000-108136800	Weak transcription	A549	lung
5	chr5:108120200-108137600	Weak transcription	Spleen	Spleen
6	chr5:108120200-108142200	Weak transcription	Aorta	Aorta
7	chr5:108120600-108146400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:108120800-108146400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr5:108121000-108138600	Weak transcription	Fetal Kidney	kidney
10	chr5:108121000-108139000	Weak transcription	Primary T cells from cord blood	blood
11	chr5:108121000-108139200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr5:108121800-108137200	Weak transcription	HSMMtube	muscle
13	chr5:108123000-108138200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:108123400-108138200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr5:108123400-108139400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr5:108124000-108136000	Weak transcription	Fetal Intestine Large	intestine
17	chr5:108124000-108137200	Weak transcription	HSMM	muscle
18	chr5:108124000-108138800	Weak transcription	Fetal Brain Male	brain
19	chr5:108124000-108139200	Weak transcription	Primary B cells from cord blood	blood
20	chr5:108124200-108135600	Weak transcription	Adipose Nuclei	Adipose
21	chr5:108124200-108136000	Weak transcription	Right Ventricle	heart
22	chr5:108124200-108141600	Weak transcription	Pancreas	Pancrea
23	chr5:108124200-108141800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:108124200-108142800	Weak transcription	Ovary	ovary
25	chr5:108124400-108137200	Weak transcription	Fetal Brain Female	brain
26	chr5:108124400-108138200	Weak transcription	Brain Angular Gyrus	brain
27	chr5:108124400-108139800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr5:108124600-108146600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr5:108124800-108149400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr5:108125200-108137800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr5:108125200-108139200	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:108125400-108135800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr5:108129000-108138200	Weak transcription	Placenta	Placenta
34	chr5:108129000-108138600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr5:108129400-108138200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr5:108131000-108135600	Weak transcription	Fetal Intestine Small	intestine
37	chr5:108131000-108135800	Weak transcription	Brain Germinal Matrix	brain
38	chr5:108131400-108138600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr5:108132000-108137600	Weak transcription	Colon Smooth Muscle	Colon
40	chr5:108132200-108135800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr5:108132200-108138600	Strong transcription	Fetal Lung	lung
42	chr5:108132400-108137000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr5:108132400-108138000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr5:108132400-108139600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:108132600-108135400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:108132600-108135400	Weak transcription	GM12878-XiMat	blood
47	chr5:108132800-108135400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr5:108132800-108135600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr5:108132800-108139200	Weak transcription	Lung	lung
50	chr5:108133000-108138400	Weak transcription	Fetal Muscle Trunk	muscle

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