Variant report

Variant	rs56178171
Chromosome Location	chr15:75256266-75256267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12903706	0.80[AFR][1000 genomes]
rs4243031	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495133	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7175135	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8033883	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9672972	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv1612	chr15:75247725-75281284	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75252000-75256400	Weak transcription	Lung	lung
2	chr15:75252000-75257200	Weak transcription	Pancreas	Pancrea
3	chr15:75252400-75256800	Weak transcription	NHDF-Ad	bronchial
4	chr15:75254200-75257000	Weak transcription	A549	lung
5	chr15:75254200-75257000	Weak transcription	Hela-S3	cervix
6	chr15:75255400-75256400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:75255600-75257000	Weak transcription	Brain Germinal Matrix	brain
8	chr15:75255800-75258000	Enhancers	HUVEC	blood vessel
9	chr15:75256000-75256400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:75256000-75257600	Enhancers	Spleen	Spleen
11	chr15:75256200-75257000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:75256200-75257600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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