Variant report

Variant	rs6495133
Chromosome Location	chr15:75255458-75255459
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12903706	0.81[AFR][1000 genomes]
rs1561893	0.80[JPT][hapmap];0.82[LWK][hapmap]
rs2415250	0.82[YRI][hapmap]
rs4243031	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56178171	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7175135	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8033883	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041468	0.80[JPT][hapmap];0.91[LWK][hapmap];0.93[YRI][hapmap]
rs9672972	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv1612	chr15:75247725-75281284	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6495133	CYP1A1	cis	cerebellum	SCAN
rs6495133	C15orf34	cis	cerebellum	SCAN
rs6495133	SNUPN	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75252000-75256400	Weak transcription	Lung	lung
2	chr15:75252000-75257200	Weak transcription	Pancreas	Pancrea
3	chr15:75252400-75255600	Enhancers	Brain Germinal Matrix	brain
4	chr15:75252400-75256800	Weak transcription	NHDF-Ad	bronchial
5	chr15:75252800-75255800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:75253000-75255800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:75254000-75256200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:75254200-75257000	Weak transcription	A549	lung
9	chr15:75254200-75257000	Weak transcription	Hela-S3	cervix
10	chr15:75254800-75255800	Weak transcription	HUVEC	blood vessel
11	chr15:75255400-75256400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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