Variant report

Variant	rs8041468
Chromosome Location	chr15:75270654-75270655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1561893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561894	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3812944	0.85[MEX][hapmap]
rs6495133	0.80[JPT][hapmap];0.91[LWK][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv1612	chr15:75247725-75281284	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	esv3356421	chr15:75268124-75270672	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3405693	chr15:75268199-75270747	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75257600-75270800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:75270000-75271200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:75270000-75271400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:75270000-75271400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:75270000-75271400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr15:75270000-75271400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:75270000-75271400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:75270000-75271400	Enhancers	NH-A	brain
9	chr15:75270000-75271400	Enhancers	NHDF-Ad	bronchial
10	chr15:75270000-75272000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:75270000-75272400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr15:75270200-75271600	Enhancers	Brain Hippocampus Middle	brain
13	chr15:75270200-75271600	Enhancers	Brain Substantia Nigra	brain
14	chr15:75270200-75272200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr15:75270200-75276200	Weak transcription	HSMM	muscle
16	chr15:75270600-75271400	Enhancers	A549	lung
17	chr15:75270600-75271600	Enhancers	Brain Cingulate Gyrus	brain
18	chr15:75270600-75272200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr15:75270600-75276200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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