Variant report

Variant	rs1561894
Chromosome Location	chr15:75271607-75271608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12593566	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs12900654	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs12912959	0.82[ASN][1000 genomes]
rs1561893	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17422130	0.86[CHB][hapmap]
rs2083730	0.86[CHB][hapmap]
rs4886651	0.86[CHB][hapmap]
rs59152319	0.85[ASN][1000 genomes]
rs6495139	0.82[ASN][1000 genomes]
rs6495141	0.82[ASN][1000 genomes]
rs6495143	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs7167814	0.82[AFR][1000 genomes]
rs7172565	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8041468	1.00[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv1612	chr15:75247725-75281284	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75270000-75272000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr15:75270000-75272400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr15:75270200-75272200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr15:75270200-75276200	Weak transcription	HSMM	muscle
5	chr15:75270600-75272200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr15:75270600-75276200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:75271000-75272200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr15:75271000-75272400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:75271200-75272200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr15:75271200-75276000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:75271400-75271800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:75271400-75272200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:75271400-75276200	Weak transcription	A549	lung
14	chr15:75271400-75276200	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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