Variant report
| Variant | rs59152319 |
|---|---|
| Chromosome Location | chr15:75280813-75280814 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:75274624..75277019-chr15:75280477..75282648,3 | MCF-7 | breast: | |
| 2 | chr15:75197077..75198706-chr15:75280460..75282159,2 | MCF-7 | breast: | |
| 3 | chr15:75063135..75063986-chr15:75280277..75280997,2 | MCF-7 | breast: | |
| 4 | chr15:75242403..75243361-chr15:75280099..75281035,2 | MCF-7 | breast: | |
| 5 | chr15:75063133..75064034-chr15:75280031..75281063,7 | MCF-7 | breast: | |
| 6 | chr15:75248236..75249066-chr15:75280065..75280985,3 | MCF-7 | breast: | |
| 7 | chr15:75279778..75281928-chr15:75287388..75289491,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000199580 | Chromatin interaction |
| ENSG00000198794 | Chromatin interaction |
| ENSG00000178718 | Chromatin interaction |
| ENSG00000178761 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs12593566 | 0.96[ASN][1000 genomes] |
| rs12900654 | 0.96[ASN][1000 genomes] |
| rs12912959 | 0.96[ASN][1000 genomes] |
| rs1561894 | 0.85[ASN][1000 genomes] |
| rs59307715 | 0.81[ASN][1000 genomes] |
| rs6495139 | 0.96[ASN][1000 genomes] |
| rs6495141 | 0.96[ASN][1000 genomes] |
| rs6495143 | 0.96[ASN][1000 genomes] |
| rs7172565 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv569993 | chr15:75242155-75483752 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 72 gene(s) | inside rSNPs | diseases |
| 2 | nsv1612 | chr15:75247725-75281284 | Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
| 3 | nsv542435 | chr15:75271788-75321117 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:75280800-75281000 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
