Variant report
| Variant | rs7172565 |
|---|---|
| Chromosome Location | chr15:75278170-75278171 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000178718 | Chromatin interaction |
| ENSG00000178741 | Chromatin interaction |
| ENSG00000198794 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs12593566 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs12900654 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs12912959 | 0.89[ASN][1000 genomes] |
| rs1561894 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17422130 | 1.00[CHB][hapmap] |
| rs2083730 | 1.00[CHB][hapmap] |
| rs3812944 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs4886651 | 1.00[CHB][hapmap] |
| rs59152319 | 0.93[ASN][1000 genomes] |
| rs6495139 | 0.89[ASN][1000 genomes] |
| rs6495141 | 0.89[ASN][1000 genomes] |
| rs6495143 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs7171200 | 1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv569993 | chr15:75242155-75483752 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 72 gene(s) | inside rSNPs | diseases |
| 2 | nsv1612 | chr15:75247725-75281284 | Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
| 3 | nsv542435 | chr15:75271788-75321117 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
