Variant report

Variant	rs1561893
Chromosome Location	chr15:75271128-75271129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr15:75270933-75271136	H1-hESC	embryonic stem cell:	n/a	chr15:75271031-75271041 chr15:75271031-75271041 chr15:75271031-75271041 chr15:75271032-75271040 chr15:75271031-75271041 chr15:75271006-75271015
2	FOSL2	chr15:75270746-75271300	SK-N-SH	brain:	n/a	chr15:75271031-75271041 chr15:75271031-75271041 chr15:75271031-75271041 chr15:75271032-75271040 chr15:75271031-75271041 chr15:75271006-75271015
3	FOS	chr15:75270881-75271187	HUVEC	blood vessel:	n/a	chr15:75271031-75271041 chr15:75271031-75271041 chr15:75271030-75271041 chr15:75271031-75271041 chr15:75271032-75271040 chr15:75271031-75271041 chr15:75271006-75271015
4	FOS	chr15:75270868-75271189	MCF10A-Er-Src	breast:	n/a	chr15:75271031-75271041 chr15:75271031-75271041 chr15:75271030-75271041 chr15:75271031-75271041 chr15:75271032-75271040 chr15:75271031-75271041 chr15:75271006-75271015
5	FOS	chr15:75270880-75271189	MCF10A-Er-Src	breast:	n/a	chr15:75271031-75271041 chr15:75271031-75271041 chr15:75271030-75271041 chr15:75271031-75271041 chr15:75271032-75271040 chr15:75271031-75271041 chr15:75271006-75271015
6	FOXP2	chr15:75270968-75271178	PFSK-1	brain:	n/a	n/a
7	FOS	chr15:75270985-75271161	MCF10A-Er-Src	breast:	n/a	chr15:75271031-75271041 chr15:75271031-75271041 chr15:75271030-75271041 chr15:75271031-75271041 chr15:75271032-75271040 chr15:75271031-75271041 chr15:75271006-75271015

Variant related genes	Relation type
ENSG00000261813	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1561894	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6495133	0.80[JPT][hapmap];0.82[LWK][hapmap]
rs8041468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv1612	chr15:75247725-75281284	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75270000-75271200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:75270000-75271400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:75270000-75271400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:75270000-75271400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr15:75270000-75271400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:75270000-75271400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:75270000-75271400	Enhancers	NH-A	brain
8	chr15:75270000-75271400	Enhancers	NHDF-Ad	bronchial
9	chr15:75270000-75272000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:75270000-75272400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr15:75270200-75271600	Enhancers	Brain Hippocampus Middle	brain
12	chr15:75270200-75271600	Enhancers	Brain Substantia Nigra	brain
13	chr15:75270200-75272200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr15:75270200-75276200	Weak transcription	HSMM	muscle
15	chr15:75270600-75271400	Enhancers	A549	lung
16	chr15:75270600-75271600	Enhancers	Brain Cingulate Gyrus	brain
17	chr15:75270600-75272200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr15:75270600-75276200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:75270800-75271200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:75271000-75271200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:75271000-75271200	Enhancers	Lung	lung
22	chr15:75271000-75271400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:75271000-75271400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:75271000-75271600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:75271000-75272200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr15:75271000-75272400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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