Variant report

Variant	rs56179900
Chromosome Location	chr17:63272168-63272169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16961970	0.82[AMR][1000 genomes]
rs16961972	0.82[AMR][1000 genomes]
rs16961976	0.80[AMR][1000 genomes]
rs4791208	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs55940010	0.82[AMR][1000 genomes]
rs56295410	0.82[AMR][1000 genomes]
rs57124114	0.82[AMR][1000 genomes]
rs72845354	0.80[AMR][1000 genomes]
rs8070105	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3423889	chr17:63271763-63272489	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3314823	chr17:63271948-63272494	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3363860	chr17:63271960-63272523	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3441255	chr17:63271964-63272535	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3488710	chr17:63272009-63272474	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3488711	chr17:63272009-63272474	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3338	chr17:63272010-63272468	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3314825	chr17:63272021-63272499	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3314824	chr17:63272026-63272455	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3314826	chr17:63272054-63272421	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63267400-63273400	Weak transcription	Fetal Thymus	thymus
2	chr17:63267400-63274600	Weak transcription	Fetal Brain Female	brain
3	chr17:63267800-63273000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr17:63267800-63273200	Weak transcription	Fetal Stomach	stomach
5	chr17:63267800-63273600	Weak transcription	Placenta	Placenta
6	chr17:63267800-63273800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr17:63271200-63273200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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