Variant report

Variant	rs57124114
Chromosome Location	chr17:63272803-63272804
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1011900	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12602631	0.80[ASN][1000 genomes]
rs1514502	0.82[ASN][1000 genomes]
rs16961958	0.80[ASN][1000 genomes]
rs16961965	0.93[ASN][1000 genomes]
rs16961970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16961974	0.95[ASN][1000 genomes]
rs16961976	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2191396	0.84[ASN][1000 genomes]
rs2869590	0.83[ASN][1000 genomes]
rs4790951	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4791204	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4791205	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4791207	0.99[ASN][1000 genomes]
rs4791208	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4791209	0.82[ASN][1000 genomes]
rs4791210	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55940010	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55972864	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56179900	0.82[AMR][1000 genomes]
rs56295410	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72845331	0.80[ASN][1000 genomes]
rs72845338	0.82[ASN][1000 genomes]
rs72845352	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72845354	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72845372	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72853508	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs740857	0.84[ASN][1000 genomes]
rs8070105	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs875647	0.83[ASN][1000 genomes]
rs9904971	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63267400-63273400	Weak transcription	Fetal Thymus	thymus
2	chr17:63267400-63274600	Weak transcription	Fetal Brain Female	brain
3	chr17:63267800-63273000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr17:63267800-63273200	Weak transcription	Fetal Stomach	stomach
5	chr17:63267800-63273600	Weak transcription	Placenta	Placenta
6	chr17:63267800-63273800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr17:63271200-63273200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:63272600-63273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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