Variant report

Variant	rs72845352
Chromosome Location	chr17:63275568-63275569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1011900	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16961970	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16961972	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16961974	0.84[ASN][1000 genomes]
rs16961976	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4790951	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4791204	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4791205	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4791207	0.82[ASN][1000 genomes]
rs4791208	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4791210	0.82[AMR][1000 genomes]
rs55940010	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55972864	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56295410	0.85[AMR][1000 genomes]
rs57124114	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72845354	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72845372	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72853508	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8070105	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63273000-63276000	Enhancers	Fetal Brain Male	brain
2	chr17:63274000-63279400	Weak transcription	Right Atrium	heart
3	chr17:63274000-63279800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr17:63274600-63282800	Weak transcription	NH-A	brain
5	chr17:63274800-63279800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr17:63275000-63277400	Weak transcription	Stomach Mucosa	stomach
7	chr17:63275000-63279400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr17:63275000-63279400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr17:63275200-63277400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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