Variant report

Variant	rs16961974
Chromosome Location	chr17:63275018-63275019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63274496..63275079-chr17:64161642..64162322,2	MCF-7	breast:
2	chr17:63274102..63275070-chr17:63552570..63553437,5	MCF-7	breast:
3	chr17:63227506..63228525-chr17:63274227..63275044,6	MCF-7	breast:
4	chr17:63274350..63275077-chr17:63552188..63553540,5	MCF-7	breast:
5	chr17:63274077..63275163-chr17:63983745..63984867,8	MCF-7	breast:
6	chr17:63274573..63275230-chr17:63790259..63791479,3	MCF-7	breast:
7	chr17:63274176..63275076-chr17:64161674..64162346,3	MCF-7	breast:
8	chr17:63274393..63275045-chr17:64621458..64621982,2	MCF-7	breast:
9	chr17:63274317..63276414-chr17:63276613..63279596,3	MCF-7	breast:

No data

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1514502	0.80[ASN][1000 genomes]
rs16961965	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16961970	0.96[ASN][1000 genomes]
rs16961972	0.96[ASN][1000 genomes]
rs2191396	0.80[ASN][1000 genomes]
rs28377838	0.82[AMR][1000 genomes]
rs2869590	0.81[ASN][1000 genomes]
rs2869822	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2869824	0.84[EUR][1000 genomes]
rs2869825	0.83[EUR][1000 genomes]
rs2904204	0.84[EUR][1000 genomes]
rs4791207	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4791208	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4791209	0.80[ASN][1000 genomes]
rs4791210	0.81[ASN][1000 genomes]
rs55940010	0.91[ASN][1000 genomes]
rs57124114	0.95[ASN][1000 genomes]
rs7224599	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845338	0.80[ASN][1000 genomes]
rs72845352	0.84[ASN][1000 genomes]
rs740857	0.81[ASN][1000 genomes]
rs8070105	0.97[ASN][1000 genomes]
rs875647	0.81[ASN][1000 genomes]
rs9896306	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9896684	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9904971	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63273000-63275200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr17:63273000-63276000	Enhancers	Fetal Brain Male	brain
3	chr17:63273400-63275200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr17:63273400-63275200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr17:63273600-63275200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr17:63273600-63275200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr17:63274000-63279400	Weak transcription	Right Atrium	heart
8	chr17:63274000-63279800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr17:63274400-63275200	Bivalent Enhancer	Fetal Stomach	stomach
10	chr17:63274600-63275200	Enhancers	Fetal Brain Female	brain
11	chr17:63274600-63275200	Enhancers	Right Ventricle	heart
12	chr17:63274600-63282800	Weak transcription	NH-A	brain
13	chr17:63274800-63275200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr17:63274800-63275200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr17:63274800-63275200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr17:63274800-63275200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr17:63274800-63275200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr17:63274800-63275200	Bivalent Enhancer	HepG2	liver
19	chr17:63274800-63279800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr17:63275000-63277400	Weak transcription	Stomach Mucosa	stomach
21	chr17:63275000-63279400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr17:63275000-63279400	Weak transcription	Rectal Mucosa Donor 31	rectum

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