Variant report

Variant	rs4791210
Chromosome Location	chr17:63261111-63261112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1011900	0.82[AMR][1000 genomes]
rs12051686	0.94[ASN][1000 genomes]
rs12602631	0.94[ASN][1000 genomes]
rs1514502	0.99[ASN][1000 genomes]
rs16961958	0.94[ASN][1000 genomes]
rs16961965	0.87[ASN][1000 genomes]
rs16961970	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16961972	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16961974	0.81[ASN][1000 genomes]
rs16961976	0.82[AMR][1000 genomes]
rs2191396	0.96[ASN][1000 genomes]
rs2869590	0.97[ASN][1000 genomes]
rs4790952	0.95[ASN][1000 genomes]
rs4791204	0.82[AMR][1000 genomes]
rs4791205	0.82[AMR][1000 genomes]
rs4791207	0.82[ASN][1000 genomes]
rs4791208	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4791209	0.99[ASN][1000 genomes]
rs55940010	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55972864	0.82[AMR][1000 genomes]
rs57124114	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72845331	0.94[ASN][1000 genomes]
rs72845338	0.99[ASN][1000 genomes]
rs72845352	0.82[AMR][1000 genomes]
rs72845354	0.82[AMR][1000 genomes]
rs72845372	0.80[AMR][1000 genomes]
rs72853508	0.80[AMR][1000 genomes]
rs740857	0.96[ASN][1000 genomes]
rs8070105	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs875647	0.97[ASN][1000 genomes]
rs876404	0.86[ASN][1000 genomes]
rs9904971	0.96[ASN][1000 genomes]
rs9915740	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63258600-63261600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr17:63258800-63261200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr17:63259000-63261200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr17:63259000-63261400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr17:63259000-63261600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:63259000-63264400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr17:63259200-63261400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr17:63259200-63264600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr17:63260400-63261400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr17:63260600-63262400	Enhancers	Primary T cells from cord blood	blood
11	chr17:63260800-63262400	Enhancers	HUVEC	blood vessel
12	chr17:63261000-63262200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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