Variant report

Variant	rs72845372
Chromosome Location	chr17:63283635-63283636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1011900	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16961970	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16961972	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16961976	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2109446	0.90[ASN][1000 genomes]
rs2159539	0.83[ASN][1000 genomes]
rs28377838	0.98[ASN][1000 genomes]
rs2869822	0.99[ASN][1000 genomes]
rs2869823	0.86[ASN][1000 genomes]
rs2869824	0.86[ASN][1000 genomes]
rs2869825	0.86[ASN][1000 genomes]
rs2904204	0.86[ASN][1000 genomes]
rs4790949	0.87[ASN][1000 genomes]
rs4790951	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4791204	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4791205	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4791208	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4791210	0.80[AMR][1000 genomes]
rs55940010	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55972864	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56007713	0.90[ASN][1000 genomes]
rs56295410	0.83[AMR][1000 genomes]
rs57124114	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6504291	0.84[ASN][1000 genomes]
rs718597	0.84[ASN][1000 genomes]
rs7216343	0.84[ASN][1000 genomes]
rs7224599	0.99[ASN][1000 genomes]
rs72845352	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72845354	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72845356	0.98[ASN][1000 genomes]
rs72845357	0.95[ASN][1000 genomes]
rs72853508	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8067633	0.95[ASN][1000 genomes]
rs8070105	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9896306	0.98[ASN][1000 genomes]
rs9896684	0.98[ASN][1000 genomes]
rs9908306	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63279600-63286800	Weak transcription	Right Atrium	heart
2	chr17:63280600-63284800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr17:63280600-63285400	Weak transcription	Stomach Mucosa	stomach
4	chr17:63280600-63285800	Weak transcription	HUVEC	blood vessel
5	chr17:63281000-63286200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr17:63282600-63284000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr17:63282600-63284000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr17:63282600-63284000	Enhancers	HSMMtube	muscle
9	chr17:63282600-63284400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr17:63282800-63283800	Enhancers	Fetal Heart	heart
11	chr17:63282800-63284000	Enhancers	NH-A	brain
12	chr17:63283000-63283800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr17:63283000-63283800	Enhancers	Osteobl	bone
14	chr17:63283400-63283800	Enhancers	Ovary	ovary
15	chr17:63283400-63284000	Enhancers	Lung	lung
16	chr17:63283600-63283800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr17:63283600-63283800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr17:63283600-63283800	Flanking Active TSS	HSMM	muscle
19	chr17:63283600-63284000	Enhancers	Spleen	Spleen
20	chr17:63283600-63284000	Bivalent Enhancer	NHLF	lung

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