Variant report

Variant	rs2159539
Chromosome Location	chr17:63285586-63285587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63285511..63287118-chr17:63294136..63295696,2	K562	blood:
2	chr17:63284949..63286460-chr17:63288747..63290967,2	MCF-7	breast:
3	chr17:63284830..63287385-chr17:63556177..63558917,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168646	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1011900	0.82[ASN][1000 genomes]
rs12051686	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12941985	0.81[AMR][1000 genomes]
rs16961976	0.82[ASN][1000 genomes]
rs1962808	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28377838	0.82[ASN][1000 genomes]
rs2869590	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2869822	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2869823	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2869824	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2869825	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2904204	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4547370	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4790950	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4790952	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4791204	0.82[ASN][1000 genomes]
rs4791205	0.82[ASN][1000 genomes]
rs55972864	0.82[ASN][1000 genomes]
rs56299799	0.86[ASN][1000 genomes]
rs6504291	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs718597	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7206992	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7208337	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7216343	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7217516	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7224599	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7225676	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72845354	0.82[ASN][1000 genomes]
rs72845356	0.81[ASN][1000 genomes]
rs72845372	0.83[ASN][1000 genomes]
rs72853508	0.82[ASN][1000 genomes]
rs8067633	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8075545	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8081577	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs875647	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9896306	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9896684	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9908306	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63279600-63286800	Weak transcription	Right Atrium	heart
2	chr17:63280600-63285800	Weak transcription	HUVEC	blood vessel
3	chr17:63281000-63286200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:63283800-63286000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr17:63283800-63286600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:63283800-63286600	Weak transcription	Fetal Heart	heart
7	chr17:63284000-63285800	Enhancers	Colonic Mucosa	Colon
8	chr17:63284000-63286600	Weak transcription	Lung	lung
9	chr17:63284000-63286600	Weak transcription	Spleen	Spleen
10	chr17:63284400-63286800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr17:63284800-63286600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr17:63284800-63290200	Weak transcription	Ovary	ovary
13	chr17:63285000-63286000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr17:63285200-63285600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr17:63285200-63286800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr17:63285400-63286000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr17:63285400-63286000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr17:63285400-63286400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr17:63285400-63286600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr17:63285400-63287200	Enhancers	Stomach Mucosa	stomach

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