Variant report
| Variant | rs8075545 |
|---|---|
| Chromosome Location | chr17:63253798-63253799 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:63252016..63254731-chr17:63266965..63269419,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RGS9-4 | chr17:63253443-63253874 | expReg_chr17_10753_+ |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs12051686 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs16961965 | 0.87[AMR][1000 genomes] |
| rs1962808 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2159539 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2869590 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2869823 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2869824 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2869825 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2904204 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4547370 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4790950 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4790952 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs57715929 | 0.86[ASN][1000 genomes] |
| rs6504291 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs718597 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7206992 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7208337 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7216343 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7217516 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7225676 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72845321 | 0.88[ASN][1000 genomes] |
| rs8081577 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs875647 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs876404 | 0.82[ASN][1000 genomes] |
| rs9915740 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530764 | chr17:62939944-63278472 | Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | nsv482610 | chr17:63214370-63372334 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:63253600-63260200 | Weak transcription | Pancreas | Pancrea |
