Variant report

Variant	rs7225676
Chromosome Location	chr17:63301222-63301223
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12051686	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1860557	0.86[ASN][1000 genomes]
rs1962808	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2159539	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2869590	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2869822	0.84[EUR][1000 genomes]
rs2869823	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2869824	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2869825	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2904204	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4547370	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4790950	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4790952	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6504291	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs718597	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7206992	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7208337	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7216343	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7217516	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7224599	0.84[EUR][1000 genomes]
rs72853520	0.84[ASN][1000 genomes]
rs8067633	0.84[EUR][1000 genomes]
rs8075545	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8081577	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs875647	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9896306	0.84[EUR][1000 genomes]
rs9896684	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63301200-63301400	ZNF genes & repeats	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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