Variant report

Variant	rs8081577
Chromosome Location	chr17:63293639-63293640
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12051686	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12941985	0.81[AMR][1000 genomes]
rs1962808	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2159539	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2869590	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2869822	0.85[EUR][1000 genomes]
rs2869823	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2869824	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2869825	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2904204	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4547370	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4790949	0.84[ASN][1000 genomes]
rs4790950	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4790952	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56007713	0.86[ASN][1000 genomes]
rs56299799	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6504291	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs718597	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7206992	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7208337	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7216343	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7217516	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7224599	0.85[EUR][1000 genomes]
rs7225676	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8067633	0.84[EUR][1000 genomes]
rs8075545	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs875647	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9896306	0.85[EUR][1000 genomes]
rs9896684	0.85[EUR][1000 genomes]
rs9908306	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8081577	HEATR6	cis	cerebellum	SCAN
rs8081577	YPEL2	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63287200-63294200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr17:63287200-63297400	Weak transcription	Right Atrium	heart
3	chr17:63290800-63294000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr17:63290800-63300200	Weak transcription	Fetal Lung	lung
5	chr17:63290800-63301200	Weak transcription	Pancreas	Pancrea
6	chr17:63291000-63294000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr17:63291000-63294000	Weak transcription	Fetal Muscle Leg	muscle
8	chr17:63293400-63294200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr17:63293400-63294600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr17:63293400-63295200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:63293400-63295400	Enhancers	NHDF-Ad	bronchial
12	chr17:63293600-63295000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links