Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1011900	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16961976	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2159539	0.96[ASN][1000 genomes]
rs28377838	0.84[ASN][1000 genomes]
rs2869822	0.86[ASN][1000 genomes]
rs2869823	0.99[ASN][1000 genomes]
rs2869824	0.99[ASN][1000 genomes]
rs2869825	0.99[ASN][1000 genomes]
rs2904204	0.99[ASN][1000 genomes]
rs4790950	0.91[ASN][1000 genomes]
rs4790951	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4791204	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4791205	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55972864	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56299799	0.89[ASN][1000 genomes]
rs6504291	0.98[ASN][1000 genomes]
rs718597	0.98[ASN][1000 genomes]
rs7206992	0.91[ASN][1000 genomes]
rs7208337	0.91[ASN][1000 genomes]
rs7216343	0.98[ASN][1000 genomes]
rs7217516	0.91[ASN][1000 genomes]
rs7224599	0.86[ASN][1000 genomes]
rs72845354	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72845356	0.84[ASN][1000 genomes]
rs72845357	0.82[ASN][1000 genomes]
rs72845372	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72853508	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8067633	0.82[ASN][1000 genomes]
rs8081577	0.89[ASN][1000 genomes]
rs9896306	0.84[ASN][1000 genomes]
rs9896684	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9908306	PECAM1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63279600-63286800	Weak transcription	Right Atrium	heart
2	chr17:63280600-63284800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr17:63280600-63285400	Weak transcription	Stomach Mucosa	stomach
4	chr17:63280600-63285800	Weak transcription	HUVEC	blood vessel
5	chr17:63281000-63286200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr17:63283800-63284600	Weak transcription	Ovary	ovary
7	chr17:63283800-63286000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr17:63283800-63286600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:63283800-63286600	Weak transcription	Fetal Heart	heart
10	chr17:63284000-63285800	Enhancers	Colonic Mucosa	Colon
11	chr17:63284000-63286600	Weak transcription	Lung	lung
12	chr17:63284000-63286600	Weak transcription	Spleen	Spleen
13	chr17:63284400-63286800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search: