Variant report

Variant	rs72845357
Chromosome Location	chr17:63276528-63276529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1011900	0.97[ASN][1000 genomes]
rs12602631	0.85[AMR][1000 genomes]
rs1514502	0.92[AMR][1000 genomes]
rs16961958	0.85[AMR][1000 genomes]
rs16961976	0.97[ASN][1000 genomes]
rs16962041	0.88[AMR][1000 genomes]
rs1860557	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2109446	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28377838	0.95[ASN][1000 genomes]
rs2869822	0.95[ASN][1000 genomes]
rs2869823	0.82[ASN][1000 genomes]
rs2869824	0.82[ASN][1000 genomes]
rs2869825	0.82[ASN][1000 genomes]
rs2904204	0.82[ASN][1000 genomes]
rs4790949	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4790951	0.92[ASN][1000 genomes]
rs4791204	0.97[ASN][1000 genomes]
rs4791205	0.97[ASN][1000 genomes]
rs4791209	0.90[AMR][1000 genomes]
rs55972864	0.97[ASN][1000 genomes]
rs56007713	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57715929	0.88[AMR][1000 genomes]
rs6504291	0.83[ASN][1000 genomes]
rs718597	0.83[ASN][1000 genomes]
rs7216343	0.83[ASN][1000 genomes]
rs7217286	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7217967	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7224599	0.95[ASN][1000 genomes]
rs72845321	0.85[AMR][1000 genomes]
rs72845331	0.85[AMR][1000 genomes]
rs72845338	0.92[AMR][1000 genomes]
rs72845354	0.97[ASN][1000 genomes]
rs72845356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72845372	0.95[ASN][1000 genomes]
rs72853508	0.95[ASN][1000 genomes]
rs72853520	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs740857	0.85[AMR][1000 genomes]
rs8067633	0.93[ASN][1000 genomes]
rs876404	0.85[AMR][1000 genomes]
rs9896306	0.96[ASN][1000 genomes]
rs9896684	0.96[ASN][1000 genomes]
rs9908306	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63274000-63279400	Weak transcription	Right Atrium	heart
2	chr17:63274000-63279800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr17:63274600-63282800	Weak transcription	NH-A	brain
4	chr17:63274800-63279800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr17:63275000-63277400	Weak transcription	Stomach Mucosa	stomach
6	chr17:63275000-63279400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr17:63275000-63279400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr17:63275200-63277400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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