Variant report

Variant	rs7217967
Chromosome Location	chr17:63304973-63304974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12602631	0.80[AMR][1000 genomes]
rs1514502	0.85[AMR][1000 genomes]
rs16961958	0.80[AMR][1000 genomes]
rs16962041	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1860557	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2109446	0.87[AMR][1000 genomes]
rs4790949	0.86[AMR][1000 genomes]
rs4791209	0.82[AMR][1000 genomes]
rs56007713	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7217286	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72845321	0.80[AMR][1000 genomes]
rs72845331	0.80[AMR][1000 genomes]
rs72845338	0.85[AMR][1000 genomes]
rs72845356	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72845357	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72853520	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs876404	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63304200-63308800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:63304400-63307600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:63304800-63305200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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