Variant report

Variant	rs16962041
Chromosome Location	chr17:63308049-63308050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1514502	0.81[AMR][1000 genomes]
rs17688887	1.00[YRI][hapmap]
rs1860557	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2109446	0.85[AMR][1000 genomes]
rs299821	1.00[YRI][hapmap]
rs4790949	0.84[AMR][1000 genomes]
rs56007713	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7217286	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7217967	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72845338	0.81[AMR][1000 genomes]
rs72845356	0.88[AMR][1000 genomes]
rs72845357	0.88[AMR][1000 genomes]
rs72853520	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63304200-63308800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:63307000-63310400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:63307200-63308400	Enhancers	Placenta	Placenta
4	chr17:63307400-63308600	Enhancers	Lung	lung
5	chr17:63307400-63309400	Enhancers	Brain Germinal Matrix	brain
6	chr17:63307600-63308800	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr17:63307600-63309000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr17:63307800-63308800	Bivalent Enhancer	HUVEC	blood vessel
9	chr17:63307800-63309000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr17:63307800-63309400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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