Variant report

Variant	rs17688887
Chromosome Location	chr17:63187533-63187534
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:62969753..62972394-chr17:63187486..63190277,2	MCF-7	breast:
2	chr17:63170124..63172444-chr17:63186686..63188784,3	MCF-7	breast:
3	chr17:63168106..63170143-chr17:63186322..63188015,2	MCF-7	breast:
4	chr17:63173089..63175684-chr17:63187453..63189983,2	MCF-7	breast:
5	chr17:63182143..63186643-chr17:63187200..63191451,4	K562	blood:
6	chr17:63187427..63189575-chr17:63192688..63195181,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214174	Chromatin interaction
ENSG00000108370	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12943735	1.00[ASN][1000 genomes]
rs1514500	1.00[CEU][hapmap]
rs28542898	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869579	1.00[CEU][hapmap]
rs2869580	1.00[CEU][hapmap]
rs2869581	1.00[ASN][1000 genomes]
rs2869583	1.00[ASN][1000 genomes]
rs299821	1.00[YRI][hapmap]
rs446575	1.00[YRI][hapmap]
rs4790954	1.00[CEU][hapmap]
rs55686226	1.00[ASN][1000 genomes]
rs55904132	1.00[ASN][1000 genomes]
rs56269736	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59885956	1.00[ASN][1000 genomes]
rs62065135	1.00[ASN][1000 genomes]
rs7211964	1.00[ASN][1000 genomes]
rs7220751	0.90[CEU][hapmap]
rs73330465	1.00[ASN][1000 genomes]
rs73994748	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072603	1.00[CEU][hapmap]
rs9900568	1.00[CEU][hapmap]
rs9900709	1.00[CEU][hapmap]
rs9904207	1.00[CEU][hapmap]
rs9904540	0.83[CEU][hapmap];0.83[AMR][1000 genomes]
rs9907146	1.00[CEU][hapmap]
rs9909092	0.83[AMR][1000 genomes]
rs9914790	1.00[CEU][hapmap]
rs9916092	1.00[CEU][hapmap]
rs9916373	1.00[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63169800-63190800	Weak transcription	Gastric	stomach
2	chr17:63176400-63223800	Weak transcription	Lung	lung
3	chr17:63180000-63194600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:63180600-63194800	Weak transcription	Brain Hippocampus Middle	brain
5	chr17:63181200-63192800	Weak transcription	Dnd41	blood
6	chr17:63181200-63197400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr17:63181600-63189400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr17:63181800-63209600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr17:63182200-63187800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr17:63182800-63192800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:63184800-63197600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr17:63186200-63187600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr17:63186400-63189000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr17:63186600-63188800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr17:63186600-63188800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr17:63186600-63189000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr17:63186600-63189000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr17:63186600-63189000	Enhancers	NHDF-Ad	bronchial
19	chr17:63186600-63190200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr17:63186800-63187800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr17:63186800-63189000	Enhancers	NHEK	skin
22	chr17:63186800-63189600	Enhancers	HSMMtube	muscle
23	chr17:63186800-63190200	Enhancers	A549	lung
24	chr17:63187000-63188800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr17:63187000-63190200	Enhancers	HMEC	breast
26	chr17:63187000-63194800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr17:63187200-63187600	Flanking Active TSS	NH-A	brain
28	chr17:63187200-63189000	Enhancers	HUVEC	blood vessel
29	chr17:63187200-63190400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr17:63187200-63190400	Enhancers	HSMM	muscle
31	chr17:63187200-63192000	Weak transcription	Brain Anterior Caudate	brain
32	chr17:63187400-63187800	Weak transcription	Osteobl	bone
33	chr17:63187400-63188200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr17:63187400-63191200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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