Variant report

Variant	rs7220751
Chromosome Location	chr17:63220551-63220552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63219396..63221791-chr17:63248396..63250246,2	MCF-7	breast:
2	chr17:63218520..63220309-chr17:63220365..63222193,2	MCF-7	breast:
3	chr17:63215587..63218339-chr17:63218800..63221692,3	MCF-7	breast:
4	chr17:63220426..63221946-chr17:63223585..63225928,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1004533	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs1122078	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1122079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12450751	0.89[ASN][1000 genomes]
rs1473919	0.86[ASN][1000 genomes]
rs1473921	0.97[ASN][1000 genomes]
rs1514500	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs1554050	0.94[ASN][1000 genomes]
rs16961258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17688887	0.90[CEU][hapmap]
rs1877823	0.96[ASN][1000 genomes]
rs2292592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2292593	0.80[ASN][1000 genomes]
rs2869577	0.85[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2869579	0.92[CEU][hapmap]
rs2869580	0.92[CEU][hapmap]
rs4790953	0.95[ASN][1000 genomes]
rs4790954	0.92[CEU][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4790955	0.81[ASN][1000 genomes]
rs4790956	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs4791214	0.93[ASN][1000 genomes]
rs4791215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs57672979	0.91[ASN][1000 genomes]
rs57941427	0.87[ASN][1000 genomes]
rs59173947	0.80[EUR][1000 genomes]
rs60116986	0.81[ASN][1000 genomes]
rs61524757	0.81[ASN][1000 genomes]
rs61708414	0.80[EUR][1000 genomes]
rs7221174	0.83[ASN][1000 genomes]
rs73330404	0.81[ASN][1000 genomes]
rs8066949	0.88[ASN][1000 genomes]
rs8066968	0.88[ASN][1000 genomes]
rs8067258	0.86[ASN][1000 genomes]
rs8072505	0.89[ASN][1000 genomes]
rs8072603	0.92[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs8078293	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8078678	0.89[ASN][1000 genomes]
rs8081457	0.94[ASN][1000 genomes]
rs9900568	0.92[CEU][hapmap]
rs9900709	0.92[CEU][hapmap]
rs9904207	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs9904247	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9907146	0.92[CEU][hapmap]
rs9914790	0.92[CEU][hapmap]
rs9916092	0.92[CEU][hapmap]
rs9916373	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs9916445	0.85[ASN][1000 genomes]
rs9916525	0.83[ASN][1000 genomes]
rs9916766	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63217000-63223400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:63217400-63220800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:63219800-63220800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:63220200-63220600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
6	chr17:63220400-63220600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr17:63220400-63220600	Enhancers	Esophagus	oesophagus

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