Variant report

Variant	rs4790954
Chromosome Location	chr17:63203543-63203544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63200961..63203579-chr17:63204098..63206713,2	K562	blood:
2	chr17:63203039..63206876-chr17:63207747..63211148,3	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1122078	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1122079	0.82[ASN][1000 genomes]
rs12450751	0.86[ASN][1000 genomes]
rs12450836	0.97[ASN][1000 genomes]
rs1514500	1.00[CEU][hapmap]
rs1533335	0.97[ASN][1000 genomes]
rs16961258	0.86[ASN][1000 genomes]
rs17688887	1.00[CEU][hapmap]
rs2292592	0.86[ASN][1000 genomes]
rs2292593	0.98[ASN][1000 genomes]
rs2869577	0.86[ASN][1000 genomes]
rs2869579	1.00[CEU][hapmap]
rs2869580	1.00[CEU][hapmap]
rs2869581	0.80[EUR][1000 genomes]
rs4790955	1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4790956	0.99[ASN][1000 genomes]
rs4790957	0.97[ASN][1000 genomes]
rs4791215	0.84[ASN][1000 genomes]
rs4791217	0.98[ASN][1000 genomes]
rs4791218	0.95[ASN][1000 genomes]
rs55686226	0.80[EUR][1000 genomes]
rs57672979	0.89[ASN][1000 genomes]
rs57941427	0.85[ASN][1000 genomes]
rs60116986	0.99[ASN][1000 genomes]
rs60220025	0.98[ASN][1000 genomes]
rs61524757	0.99[ASN][1000 genomes]
rs7220751	0.92[CEU][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73330404	0.99[ASN][1000 genomes]
rs73347657	0.97[ASN][1000 genomes]
rs8070231	0.97[ASN][1000 genomes]
rs8072505	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8072603	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8075687	0.98[ASN][1000 genomes]
rs8075956	0.98[ASN][1000 genomes]
rs8075981	0.98[ASN][1000 genomes]
rs8077696	0.97[ASN][1000 genomes]
rs8078401	0.98[ASN][1000 genomes]
rs8078678	0.87[ASN][1000 genomes]
rs8080420	0.98[ASN][1000 genomes]
rs9890021	0.98[ASN][1000 genomes]
rs9890087	0.98[ASN][1000 genomes]
rs9900568	1.00[CEU][hapmap]
rs9900709	1.00[CEU][hapmap]
rs9904207	1.00[CEU][hapmap]
rs9904247	1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9904540	0.86[CEU][hapmap]
rs9907146	1.00[CEU][hapmap]
rs9909394	0.81[CEU][hapmap]
rs9910756	0.98[ASN][1000 genomes]
rs9914790	1.00[CEU][hapmap]
rs9916092	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs9916170	0.97[ASN][1000 genomes]
rs9916373	1.00[CEU][hapmap]
rs9916445	0.83[ASN][1000 genomes]
rs9916525	0.94[ASN][1000 genomes]
rs9916720	0.97[ASN][1000 genomes]
rs9916766	0.99[ASN][1000 genomes]
rs9916789	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63181800-63209600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr17:63193800-63209800	Weak transcription	Dnd41	blood
4	chr17:63195000-63205000	Weak transcription	Brain Substantia Nigra	brain
5	chr17:63195000-63205400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr17:63195000-63212400	Weak transcription	Pancreas	Pancrea
7	chr17:63195200-63209000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr17:63199000-63217200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr17:63199200-63211800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr17:63200000-63206400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr17:63200200-63204200	Weak transcription	Brain Anterior Caudate	brain
12	chr17:63201200-63209600	Weak transcription	Gastric	stomach
13	chr17:63203200-63203600	Enhancers	Hela-S3	cervix
14	chr17:63203200-63203800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr17:63203200-63208200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:63203400-63203600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr17:63203400-63203600	Enhancers	HMEC	breast
18	chr17:63203400-63204000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr17:63203400-63204000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr17:63203400-63206800	Enhancers	Brain Germinal Matrix	brain

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