Variant report

Variant	rs9916445
Chromosome Location	chr17:63193794-63193795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63117950..63119799-chr17:63192625..63195137,2	MCF-7	breast:
2	chr17:63187427..63189575-chr17:63192688..63195181,2	MCF-7	breast:
3	chr17:63095618..63099183-chr17:63190147..63194248,3	MCF-7	breast:
4	chr17:62971941..62974413-chr17:63192651..63194902,2	K562	blood:
5	chr17:63189920..63191548-chr17:63193224..63195844,2	MCF-7	breast:
6	chr17:62970803..62973192-chr17:63191830..63194925,3	MCF-7	breast:
7	chr17:63193320..63195470-chr17:63198928..63201793,2	MCF-7	breast:
8	chr17:63181223..63183452-chr17:63191533..63194430,3	MCF-7	breast:
9	chr17:63051528..63055347-chr17:63193534..63196537,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000263470	Chromatin interaction
ENSG00000214174	Chromatin interaction
ENSG00000120063	Chromatin interaction
ENSG00000265883	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1004533	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1122079	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12450751	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12450836	0.86[ASN][1000 genomes]
rs1473919	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1473921	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1533335	0.86[ASN][1000 genomes]
rs1554050	0.82[ASN][1000 genomes]
rs16961258	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1877823	0.83[ASN][1000 genomes]
rs2056050	0.81[AMR][1000 genomes]
rs2292592	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2292593	0.85[ASN][1000 genomes]
rs2869577	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4790953	0.82[ASN][1000 genomes]
rs4790954	0.83[ASN][1000 genomes]
rs4790955	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4790956	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4790957	0.86[ASN][1000 genomes]
rs4791215	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4791217	0.85[ASN][1000 genomes]
rs4791218	0.83[ASN][1000 genomes]
rs57672979	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57941427	0.94[ASN][1000 genomes]
rs60116986	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60220025	0.85[ASN][1000 genomes]
rs61524757	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7220751	0.85[ASN][1000 genomes]
rs7221174	0.87[EUR][1000 genomes]
rs73330404	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73347657	0.86[ASN][1000 genomes]
rs8070231	0.86[ASN][1000 genomes]
rs8072505	0.96[ASN][1000 genomes]
rs8072603	0.96[ASN][1000 genomes]
rs8075687	0.85[ASN][1000 genomes]
rs8075956	0.85[ASN][1000 genomes]
rs8075981	0.85[ASN][1000 genomes]
rs8077696	0.86[ASN][1000 genomes]
rs8078293	0.80[ASN][1000 genomes]
rs8078401	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8078678	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8080420	0.85[ASN][1000 genomes]
rs8081457	0.82[ASN][1000 genomes]
rs9890021	0.85[ASN][1000 genomes]
rs9890087	0.85[ASN][1000 genomes]
rs9910756	0.85[ASN][1000 genomes]
rs9916170	0.86[ASN][1000 genomes]
rs9916720	0.86[ASN][1000 genomes]
rs9916766	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63180000-63194600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:63180600-63194800	Weak transcription	Brain Hippocampus Middle	brain
4	chr17:63181200-63197400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr17:63181800-63209600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr17:63184800-63197600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr17:63187000-63194800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr17:63188600-63197200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:63189000-63198000	Weak transcription	HUVEC	blood vessel
10	chr17:63189200-63200800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr17:63190000-63199400	Weak transcription	Right Atrium	heart
12	chr17:63190400-63198000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr17:63190400-63198200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr17:63191000-63194200	Weak transcription	Gastric	stomach
15	chr17:63191000-63194800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr17:63191200-63198800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr17:63192000-63194800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr17:63192600-63194200	Enhancers	Fetal Brain Male	brain
19	chr17:63192600-63194800	Weak transcription	Brain Anterior Caudate	brain
20	chr17:63192800-63193800	Enhancers	Dnd41	blood
21	chr17:63192800-63195000	Enhancers	Fetal Thymus	thymus
22	chr17:63193000-63193800	Enhancers	Fetal Stomach	stomach
23	chr17:63193200-63194600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr17:63193200-63195000	Enhancers	GM12878-XiMat	blood
25	chr17:63193200-63199000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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