Variant report

Variant	rs1004533
Chromosome Location	chr17:63213253-63213254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1122078	0.82[ASN][1000 genomes]
rs1122079	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12450751	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1473919	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1473921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1554050	0.90[ASN][1000 genomes]
rs16961258	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1877823	0.92[ASN][1000 genomes]
rs2056050	0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs2292592	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2869577	0.85[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4790953	0.91[ASN][1000 genomes]
rs4790955	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4790956	0.84[EUR][1000 genomes]
rs4791214	0.87[ASN][1000 genomes]
rs4791215	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57672979	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57941427	0.83[ASN][1000 genomes]
rs60116986	1.00[EUR][1000 genomes]
rs61524757	1.00[EUR][1000 genomes]
rs7220751	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs7221174	1.00[EUR][1000 genomes]
rs73330404	1.00[EUR][1000 genomes]
rs8066949	0.84[ASN][1000 genomes]
rs8066968	0.84[ASN][1000 genomes]
rs8067258	0.82[ASN][1000 genomes]
rs8072505	0.86[ASN][1000 genomes]
rs8072603	0.84[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs8078293	1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs8078401	1.00[EUR][1000 genomes]
rs8078678	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8081457	0.90[ASN][1000 genomes]
rs9892860	0.84[EUR][1000 genomes]
rs9898101	0.84[EUR][1000 genomes]
rs9904247	0.85[ASN][1000 genomes]
rs9916445	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9916766	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63199000-63217200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr17:63205800-63215000	Weak transcription	Brain Substantia Nigra	brain
4	chr17:63208800-63216400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr17:63209200-63218800	Weak transcription	Brain Anterior Caudate	brain
6	chr17:63210000-63213400	Weak transcription	Gastric	stomach
7	chr17:63211200-63213800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr17:63213200-63213400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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