Variant report

Variant	rs8078401
Chromosome Location	chr17:63201526-63201527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63200961..63203579-chr17:63204098..63206713,2	K562	blood:
2	chr1:121484533..121485419-chr17:63200735..63201538,2	MCF-7	breast:
3	chr17:63193320..63195470-chr17:63198928..63201793,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1004533	1.00[EUR][1000 genomes]
rs1122078	0.87[ASN][1000 genomes]
rs1122079	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12450751	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12450836	0.96[ASN][1000 genomes]
rs1473919	0.94[EUR][1000 genomes]
rs1473921	1.00[EUR][1000 genomes]
rs1533335	0.96[ASN][1000 genomes]
rs16961258	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2292592	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2292593	0.98[ASN][1000 genomes]
rs2869577	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4790954	0.98[ASN][1000 genomes]
rs4790955	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4790956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4790957	0.96[ASN][1000 genomes]
rs4791215	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4791217	0.97[ASN][1000 genomes]
rs4791218	0.94[ASN][1000 genomes]
rs57672979	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57941427	0.82[ASN][1000 genomes]
rs60116986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60220025	0.97[ASN][1000 genomes]
rs61524757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7221174	1.00[EUR][1000 genomes]
rs73330404	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73347657	0.96[ASN][1000 genomes]
rs8070231	0.96[ASN][1000 genomes]
rs8072505	0.84[ASN][1000 genomes]
rs8072603	0.84[ASN][1000 genomes]
rs8075687	0.97[ASN][1000 genomes]
rs8075956	0.97[ASN][1000 genomes]
rs8075981	0.97[ASN][1000 genomes]
rs8077696	0.96[ASN][1000 genomes]
rs8078678	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8080420	0.97[ASN][1000 genomes]
rs9890021	0.97[ASN][1000 genomes]
rs9890087	0.97[ASN][1000 genomes]
rs9892860	0.84[EUR][1000 genomes]
rs9898101	0.84[EUR][1000 genomes]
rs9904247	0.89[ASN][1000 genomes]
rs9910756	0.97[ASN][1000 genomes]
rs9916170	0.96[ASN][1000 genomes]
rs9916445	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9916525	0.91[ASN][1000 genomes]
rs9916720	0.96[ASN][1000 genomes]
rs9916766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63181800-63209600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr17:63193800-63203200	Weak transcription	Fetal Stomach	stomach
4	chr17:63193800-63209800	Weak transcription	Dnd41	blood
5	chr17:63195000-63203200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr17:63195000-63205000	Weak transcription	Brain Substantia Nigra	brain
7	chr17:63195000-63205400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr17:63195000-63212400	Weak transcription	Pancreas	Pancrea
9	chr17:63195200-63209000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr17:63198600-63203200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr17:63199000-63217200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr17:63199200-63211800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr17:63200000-63206400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr17:63200200-63204200	Weak transcription	Brain Anterior Caudate	brain
15	chr17:63201200-63209600	Weak transcription	Gastric	stomach

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