Variant report

Variant	rs2869577
Chromosome Location	chr17:63195592-63195593
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:62958227..62960319-chr17:63194695..63197501,2	MCF-7	breast:
2	chr17:63189920..63191548-chr17:63193224..63195844,2	MCF-7	breast:
3	chr17:63051528..63055347-chr17:63193534..63196537,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120063	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1004533	0.85[CHB][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1122079	0.85[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12450751	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12450836	0.81[CHB][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs12453731	0.80[ASN][1000 genomes]
rs1473919	0.87[EUR][1000 genomes]
rs1473921	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1533335	0.89[ASN][1000 genomes]
rs1554050	0.85[ASN][1000 genomes]
rs16961258	0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1877823	0.86[ASN][1000 genomes]
rs2056050	0.82[CHB][hapmap];0.83[AMR][1000 genomes]
rs2292592	0.84[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2292593	0.88[ASN][1000 genomes]
rs4790953	0.86[ASN][1000 genomes]
rs4790954	0.86[ASN][1000 genomes]
rs4790955	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4790956	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4790957	0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs4791214	0.82[ASN][1000 genomes]
rs4791215	0.84[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4791217	0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs4791218	0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs4791224	0.80[CHB][hapmap]
rs57672979	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57941427	0.97[ASN][1000 genomes]
rs60116986	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60220025	0.88[ASN][1000 genomes]
rs61524757	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7220751	0.85[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7221174	0.94[EUR][1000 genomes]
rs73330404	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73347657	0.89[ASN][1000 genomes]
rs8070231	0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs8072505	0.99[ASN][1000 genomes]
rs8072603	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs8075687	0.88[ASN][1000 genomes]
rs8075956	0.88[ASN][1000 genomes]
rs8075981	0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs8077696	0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs8078293	0.85[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs8078401	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8078678	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8080420	0.88[ASN][1000 genomes]
rs8081457	0.85[ASN][1000 genomes]
rs9890021	0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs9890087	0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs9910643	0.81[JPT][hapmap]
rs9910756	0.88[ASN][1000 genomes]
rs9916170	0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs9916445	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9916525	0.80[ASN][1000 genomes]
rs9916720	0.89[ASN][1000 genomes]
rs9916766	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63181200-63197400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr17:63181800-63209600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr17:63184800-63197600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr17:63188600-63197200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:63189000-63198000	Weak transcription	HUVEC	blood vessel
7	chr17:63189200-63200800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr17:63190000-63199400	Weak transcription	Right Atrium	heart
9	chr17:63190400-63198000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr17:63190400-63198200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr17:63191200-63198800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr17:63193200-63199000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:63193800-63203200	Weak transcription	Fetal Stomach	stomach
14	chr17:63193800-63209800	Weak transcription	Dnd41	blood
15	chr17:63194000-63198200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr17:63195000-63198400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr17:63195000-63198800	Weak transcription	Brain Anterior Caudate	brain
18	chr17:63195000-63203200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr17:63195000-63205000	Weak transcription	Brain Substantia Nigra	brain
20	chr17:63195000-63205400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr17:63195000-63212400	Weak transcription	Pancreas	Pancrea
22	chr17:63195200-63209000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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