Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1004533	0.95[CHB][hapmap];1.00[EUR][1000 genomes]
rs1122079	0.94[CHB][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12450751	0.94[EUR][1000 genomes]
rs1473919	0.94[EUR][1000 genomes]
rs1473921	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1554050	0.89[ASN][1000 genomes]
rs16961258	0.95[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes]
rs1877823	0.87[ASN][1000 genomes]
rs1913549	0.99[AMR][1000 genomes]
rs2292592	0.95[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2869577	0.94[EUR][1000 genomes]
rs2869588	0.92[AMR][1000 genomes]
rs4790953	0.88[ASN][1000 genomes]
rs4790955	1.00[EUR][1000 genomes]
rs4790956	0.84[EUR][1000 genomes]
rs4791215	0.95[CHB][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs57672979	1.00[EUR][1000 genomes]
rs60116986	1.00[EUR][1000 genomes]
rs61524757	1.00[EUR][1000 genomes]
rs6504287	0.93[ASN][1000 genomes]
rs7220751	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs73330404	1.00[EUR][1000 genomes]
rs8066949	0.90[ASN][1000 genomes]
rs8066968	0.90[ASN][1000 genomes]
rs8067258	0.88[ASN][1000 genomes]
rs8078293	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs8078401	1.00[EUR][1000 genomes]
rs8078678	1.00[EUR][1000 genomes]
rs8081457	0.85[ASN][1000 genomes]
rs9892860	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9898101	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9916445	0.87[EUR][1000 genomes]
rs9916766	0.80[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63232400-63236200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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