Variant report
| Variant | rs9898101 |
|---|---|
| Chromosome Location | chr17:63233955-63233956 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1004533 | 0.84[EUR][1000 genomes] |
| rs1122079 | 0.84[EUR][1000 genomes] |
| rs1473921 | 0.84[EUR][1000 genomes] |
| rs16961258 | 0.84[EUR][1000 genomes] |
| rs1913549 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2292592 | 1.00[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs2869588 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4790955 | 0.84[EUR][1000 genomes] |
| rs4791215 | 1.00[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs57672979 | 0.84[EUR][1000 genomes] |
| rs58931966 | 0.86[ASN][1000 genomes] |
| rs60116986 | 0.84[EUR][1000 genomes] |
| rs61524757 | 0.84[EUR][1000 genomes] |
| rs6504288 | 0.94[ASN][1000 genomes] |
| rs7221174 | 0.96[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs73330404 | 0.84[EUR][1000 genomes] |
| rs8066484 | 0.98[ASN][1000 genomes] |
| rs8070837 | 0.98[ASN][1000 genomes] |
| rs8078401 | 0.84[EUR][1000 genomes] |
| rs8078678 | 0.84[EUR][1000 genomes] |
| rs9892860 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9896491 | 0.94[ASN][1000 genomes] |
| rs9916255 | 0.92[ASN][1000 genomes] |
| rs9916766 | 1.00[TSI][hapmap];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530764 | chr17:62939944-63278472 | Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | nsv482610 | chr17:63214370-63372334 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:63232400-63236200 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
