Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11658673	0.80[CEU][hapmap]
rs11658773	0.80[CEU][hapmap]
rs16960957	0.80[CEU][hapmap]
rs16961703	0.84[EUR][1000 genomes]
rs16961868	0.83[EUR][1000 genomes]
rs1913549	0.92[ASN][1000 genomes]
rs2869588	0.94[ASN][1000 genomes]
rs4791214	0.87[EUR][1000 genomes]
rs4791220	0.85[CEU][hapmap]
rs55820790	0.84[EUR][1000 genomes]
rs55864812	0.83[EUR][1000 genomes]
rs57333496	0.85[EUR][1000 genomes]
rs58931966	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62063085	0.83[EUR][1000 genomes]
rs6504287	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6504288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7212442	0.83[EUR][1000 genomes]
rs7213152	0.83[EUR][1000 genomes]
rs7221051	0.83[EUR][1000 genomes]
rs7342966	0.84[EUR][1000 genomes]
rs8066484	0.94[ASN][1000 genomes]
rs8070837	0.94[ASN][1000 genomes]
rs8078293	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs8080929	0.85[CEU][hapmap]
rs9889653	0.81[CEU][hapmap]
rs9892860	0.94[ASN][1000 genomes]
rs9898101	0.94[ASN][1000 genomes]
rs9905007	0.84[EUR][1000 genomes]
rs9905226	0.84[EUR][1000 genomes]
rs9916255	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9916525	0.95[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63232400-63236200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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