Variant report

Variant	rs9916255
Chromosome Location	chr17:63239497-63239498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1913549	0.94[ASN][1000 genomes]
rs2869588	0.94[ASN][1000 genomes]
rs4791214	0.84[EUR][1000 genomes]
rs57333496	0.80[EUR][1000 genomes]
rs58931966	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6504287	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6504288	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8066484	0.94[ASN][1000 genomes]
rs8070837	0.94[ASN][1000 genomes]
rs8078293	0.83[EUR][1000 genomes]
rs9892860	0.94[ASN][1000 genomes]
rs9896491	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9898101	0.92[ASN][1000 genomes]
rs9916525	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63236800-63239800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr17:63237000-63239800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:63237000-63239800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr17:63239000-63239800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:63239200-63239600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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