Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63236231..63238458-chr17:63240487..63243296,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1004533	0.84[EUR][1000 genomes]
rs1122079	0.84[EUR][1000 genomes]
rs1473921	0.84[EUR][1000 genomes]
rs16961258	0.84[EUR][1000 genomes]
rs1913549	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2292592	0.84[EUR][1000 genomes]
rs2869588	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4790955	0.84[EUR][1000 genomes]
rs4791215	0.84[EUR][1000 genomes]
rs57672979	0.84[EUR][1000 genomes]
rs58931966	0.87[ASN][1000 genomes]
rs60116986	0.84[EUR][1000 genomes]
rs61524757	0.84[EUR][1000 genomes]
rs6504288	0.94[ASN][1000 genomes]
rs7221174	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73330404	0.84[EUR][1000 genomes]
rs8066484	0.99[ASN][1000 genomes]
rs8070837	0.99[ASN][1000 genomes]
rs8078401	0.84[EUR][1000 genomes]
rs8078678	0.84[EUR][1000 genomes]
rs9896491	0.94[ASN][1000 genomes]
rs9898101	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9916255	0.94[ASN][1000 genomes]
rs9916766	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63236200-63236800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr17:63236200-63237000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr17:63236400-63236600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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