Variant report

Variant	rs8078293
Chromosome Location	chr17:63222415-63222416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63222163..63226262-chr17:63226769..63229619,4	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1004533	1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs1122078	0.81[ASN][1000 genomes]
rs1122079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12450751	0.83[ASN][1000 genomes]
rs1473919	0.81[ASN][1000 genomes]
rs1473921	0.91[ASN][1000 genomes]
rs1554050	0.90[ASN][1000 genomes]
rs16961258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1877823	0.92[ASN][1000 genomes]
rs2292592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2292593	0.83[JPT][hapmap]
rs2869577	0.85[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4790953	0.91[ASN][1000 genomes]
rs4790956	0.83[JPT][hapmap]
rs4791214	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4791215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4791220	0.82[CEU][hapmap]
rs57672979	0.86[ASN][1000 genomes]
rs57941427	0.85[ASN][1000 genomes]
rs58931966	0.84[EUR][1000 genomes]
rs6504287	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6504288	0.86[EUR][1000 genomes]
rs7220751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8066949	0.84[ASN][1000 genomes]
rs8066968	0.84[ASN][1000 genomes]
rs8067258	0.83[ASN][1000 genomes]
rs8072505	0.84[ASN][1000 genomes]
rs8072603	0.84[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs8078678	0.84[ASN][1000 genomes]
rs8080929	0.82[CEU][hapmap]
rs8081457	0.90[ASN][1000 genomes]
rs9896491	0.86[EUR][1000 genomes]
rs9904247	0.83[ASN][1000 genomes]
rs9916255	0.83[EUR][1000 genomes]
rs9916445	0.80[ASN][1000 genomes]
rs9916525	0.94[CEU][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9916766	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63217000-63223400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:63220600-63224400	Weak transcription	Esophagus	oesophagus
4	chr17:63220600-63224400	Weak transcription	Right Atrium	heart
5	chr17:63221400-63224200	Weak transcription	Ovary	ovary
6	chr17:63221600-63228000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:63222400-63222600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:63222400-63222600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr17:63222400-63222600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr17:63222400-63222600	Enhancers	Fetal Lung	lung
11	chr17:63222400-63224800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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