Variant report

Variant	rs8067258
Chromosome Location	chr17:63227804-63227805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63227506..63228525-chr17:63274227..63275044,6	MCF-7	breast:
2	chr17:63227532..63228514-chr17:64161358..64162345,10	K562	blood:
3	chr17:63227608..63228539-chr17:64161360..64162489,5	MCF-7	breast:
4	chr17:63227219..63228262-chr17:63552568..63553138,3	MCF-7	breast:
5	chr17:63227610..63228402-chr17:63414252..63415441,3	MCF-7	breast:
6	chr17:63227758..63228510-chr17:63552269..63552793,3	MCF-7	breast:
7	chr17:63222163..63226262-chr17:63226769..63229619,4	MCF-7	breast:
8	chr17:63227468..63228401-chr17:63552301..63553181,2	K562	blood:
9	chr17:63227679..63228245-chr17:63984202..63984704,2	MCF-7	breast:
10	chr17:63227496..63228412-chr17:63983844..63984455,4	MCF-7	breast:

No data

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1004533	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs1122079	0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs1473921	0.89[ASN][1000 genomes]
rs1554050	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16961258	0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1877823	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2292592	0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2869577	0.81[CHB][hapmap]
rs4790953	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4791214	0.81[ASN][1000 genomes]
rs4791215	0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6504287	0.83[ASN][1000 genomes]
rs7220751	0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs7221174	0.88[ASN][1000 genomes]
rs8066484	0.84[EUR][1000 genomes]
rs8066949	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8066968	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8070837	0.82[EUR][1000 genomes]
rs8072603	0.84[JPT][hapmap]
rs8078293	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs8081457	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63221600-63228000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:63225200-63228200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr17:63225400-63231600	Weak transcription	Osteobl	bone
4	chr17:63225600-63228000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:63226000-63228000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr17:63227400-63228000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr17:63227400-63228200	Enhancers	NH-A	brain
8	chr17:63227600-63228000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr17:63227600-63228000	Enhancers	HUVEC	blood vessel
10	chr17:63227600-63228000	Enhancers	NHDF-Ad	bronchial
11	chr17:63227800-63228000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr17:63227800-63228000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:63227800-63228000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr17:63227800-63228000	Enhancers	Stomach Mucosa	stomach
15	chr17:63227800-63228200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr17:63227800-63228200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr17:63227800-63228400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr17:63227800-63228400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr17:63227800-63228400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr17:63227800-63228400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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