Variant report

Variant	rs9904247
Chromosome Location	chr17:63213383-63213384
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1004533	0.85[ASN][1000 genomes]
rs1122078	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1122079	0.88[ASN][1000 genomes]
rs12450836	0.88[ASN][1000 genomes]
rs1473921	0.85[ASN][1000 genomes]
rs1514500	0.80[EUR][1000 genomes]
rs1533335	0.88[ASN][1000 genomes]
rs1554050	0.83[ASN][1000 genomes]
rs16961258	0.85[ASN][1000 genomes]
rs1877823	0.85[ASN][1000 genomes]
rs2292592	0.85[ASN][1000 genomes]
rs2292593	0.90[ASN][1000 genomes]
rs28451574	0.82[EUR][1000 genomes]
rs28525077	0.82[EUR][1000 genomes]
rs4790953	0.84[ASN][1000 genomes]
rs4790954	1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4790955	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4790956	0.91[ASN][1000 genomes]
rs4790957	0.88[ASN][1000 genomes]
rs4791214	0.82[ASN][1000 genomes]
rs4791215	0.85[ASN][1000 genomes]
rs4791217	0.89[ASN][1000 genomes]
rs4791218	0.86[ASN][1000 genomes]
rs57672979	0.82[ASN][1000 genomes]
rs59173947	0.80[EUR][1000 genomes]
rs60116986	0.91[ASN][1000 genomes]
rs60220025	0.89[ASN][1000 genomes]
rs61524757	0.91[ASN][1000 genomes]
rs61708414	0.80[EUR][1000 genomes]
rs7220751	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73330404	0.91[ASN][1000 genomes]
rs73347657	0.88[ASN][1000 genomes]
rs8070231	0.88[ASN][1000 genomes]
rs8072505	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8072603	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8075687	0.89[ASN][1000 genomes]
rs8075956	0.89[ASN][1000 genomes]
rs8075981	0.89[ASN][1000 genomes]
rs8077696	0.88[ASN][1000 genomes]
rs8078293	0.83[ASN][1000 genomes]
rs8078401	0.89[ASN][1000 genomes]
rs8078678	0.80[ASN][1000 genomes]
rs8080420	0.89[ASN][1000 genomes]
rs8081457	0.83[ASN][1000 genomes]
rs9890021	0.89[ASN][1000 genomes]
rs9890087	0.89[ASN][1000 genomes]
rs9904207	0.80[EUR][1000 genomes]
rs9910756	0.89[ASN][1000 genomes]
rs9916170	0.88[ASN][1000 genomes]
rs9916525	0.93[ASN][1000 genomes]
rs9916720	0.88[ASN][1000 genomes]
rs9916766	0.91[ASN][1000 genomes]
rs9916789	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63199000-63217200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr17:63205800-63215000	Weak transcription	Brain Substantia Nigra	brain
4	chr17:63208800-63216400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr17:63209200-63218800	Weak transcription	Brain Anterior Caudate	brain
6	chr17:63210000-63213400	Weak transcription	Gastric	stomach
7	chr17:63211200-63213800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr17:63213200-63213400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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