Variant report

Variant	rs28451574
Chromosome Location	chr17:63212699-63212700
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10514867	0.87[ASN][1000 genomes]
rs1122078	0.81[EUR][1000 genomes]
rs11650746	0.87[ASN][1000 genomes]
rs11651062	0.87[ASN][1000 genomes]
rs11651081	0.81[ASN][1000 genomes]
rs11654243	0.81[ASN][1000 genomes]
rs11657250	0.87[ASN][1000 genomes]
rs11658655	0.87[ASN][1000 genomes]
rs11658673	0.81[ASN][1000 genomes]
rs11658736	0.81[ASN][1000 genomes]
rs11658773	0.81[ASN][1000 genomes]
rs1514500	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960903	0.81[ASN][1000 genomes]
rs16960905	0.81[ASN][1000 genomes]
rs16960920	0.81[ASN][1000 genomes]
rs16960957	0.81[ASN][1000 genomes]
rs16961273	0.87[ASN][1000 genomes]
rs28525077	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28542898	0.81[EUR][1000 genomes]
rs2869578	0.81[ASN][1000 genomes]
rs2869579	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2869580	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2869581	0.96[EUR][1000 genomes]
rs2869582	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2869584	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4293415	0.81[ASN][1000 genomes]
rs4588019	0.87[ASN][1000 genomes]
rs4791223	0.81[ASN][1000 genomes]
rs4791227	0.81[ASN][1000 genomes]
rs55686226	0.96[EUR][1000 genomes]
rs55847515	0.93[ASN][1000 genomes]
rs55904132	0.88[EUR][1000 genomes]
rs55948632	1.00[ASN][1000 genomes]
rs55948933	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56102951	0.81[ASN][1000 genomes]
rs59173947	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61534937	0.93[ASN][1000 genomes]
rs61708414	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62065135	0.89[EUR][1000 genomes]
rs7211341	0.81[ASN][1000 genomes]
rs7211964	0.85[EUR][1000 genomes]
rs7215502	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7217524	0.81[ASN][1000 genomes]
rs7217548	0.93[ASN][1000 genomes]
rs7218518	0.93[ASN][1000 genomes]
rs7220710	0.87[ASN][1000 genomes]
rs7220949	0.87[ASN][1000 genomes]
rs7221103	0.87[ASN][1000 genomes]
rs73330407	0.80[ASN][1000 genomes]
rs73330465	0.88[EUR][1000 genomes]
rs73347632	0.81[ASN][1000 genomes]
rs73994757	0.93[ASN][1000 genomes]
rs73994758	0.93[ASN][1000 genomes]
rs73994761	0.93[ASN][1000 genomes]
rs73994763	0.93[ASN][1000 genomes]
rs73994764	0.93[ASN][1000 genomes]
rs73994765	0.93[ASN][1000 genomes]
rs73994766	0.93[ASN][1000 genomes]
rs8065438	0.93[ASN][1000 genomes]
rs8065444	0.93[ASN][1000 genomes]
rs8066063	0.93[ASN][1000 genomes]
rs8066072	0.93[ASN][1000 genomes]
rs8068016	0.93[ASN][1000 genomes]
rs8072543	0.81[ASN][1000 genomes]
rs908089	0.81[ASN][1000 genomes]
rs925674	0.81[ASN][1000 genomes]
rs9900568	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9900709	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9904207	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904247	0.82[EUR][1000 genomes]
rs9907146	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9907374	0.80[ASN][1000 genomes]
rs9914418	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9914790	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9916092	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9916373	0.97[EUR][1000 genomes]
rs9916789	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63199000-63217200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr17:63205800-63215000	Weak transcription	Brain Substantia Nigra	brain
4	chr17:63208800-63216400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr17:63209200-63218800	Weak transcription	Brain Anterior Caudate	brain
6	chr17:63210000-63213400	Weak transcription	Gastric	stomach
7	chr17:63211200-63213800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr17:63212600-63212800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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