Variant report

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63227506..63228525-chr17:63274227..63275044,6	MCF-7	breast:
2	chr17:63227532..63228514-chr17:64161358..64162345,10	K562	blood:
3	chr17:63227608..63228539-chr17:64161360..64162489,5	MCF-7	breast:
4	chr17:63227219..63228262-chr17:63552568..63553138,3	MCF-7	breast:
5	chr17:63227610..63228402-chr17:63414252..63415441,3	MCF-7	breast:
6	chr17:63227758..63228510-chr17:63552269..63552793,3	MCF-7	breast:
7	chr17:63222163..63226262-chr17:63226769..63229619,4	MCF-7	breast:
8	chr17:63227468..63228401-chr17:63552301..63553181,2	K562	blood:
9	chr17:63227679..63228245-chr17:63984202..63984704,2	MCF-7	breast:
10	chr17:63227496..63228412-chr17:63983844..63984455,4	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12943735	1.00[ASN][1000 genomes]
rs1514500	0.91[EUR][1000 genomes]
rs17688887	1.00[ASN][1000 genomes]
rs28451574	0.89[EUR][1000 genomes]
rs28525077	0.89[EUR][1000 genomes]
rs28542898	1.00[ASN][1000 genomes]
rs2869579	0.87[EUR][1000 genomes]
rs2869580	0.87[EUR][1000 genomes]
rs2869581	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869582	0.87[EUR][1000 genomes]
rs2869583	1.00[ASN][1000 genomes]
rs2869584	0.87[EUR][1000 genomes]
rs55686226	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55904132	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55948933	0.87[EUR][1000 genomes]
rs59173947	0.91[EUR][1000 genomes]
rs59885956	1.00[ASN][1000 genomes]
rs61708414	0.91[EUR][1000 genomes]
rs7211964	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215502	0.87[EUR][1000 genomes]
rs73330465	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73994748	1.00[ASN][1000 genomes]
rs9900568	0.85[EUR][1000 genomes]
rs9900709	0.87[EUR][1000 genomes]
rs9904207	0.91[EUR][1000 genomes]
rs9907146	0.87[EUR][1000 genomes]
rs9914418	0.87[EUR][1000 genomes]
rs9914790	0.87[EUR][1000 genomes]
rs9916092	0.88[EUR][1000 genomes]
rs9916373	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916789	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63225200-63228200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr17:63225400-63231600	Weak transcription	Osteobl	bone
3	chr17:63227400-63228200	Enhancers	NH-A	brain
4	chr17:63227800-63228200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr17:63227800-63228200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr17:63227800-63228400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr17:63227800-63228400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr17:63227800-63228400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr17:63227800-63228400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr17:63228000-63228400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:63228000-63228400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:63228000-63228400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr17:63228000-63229200	Enhancers	Fetal Brain Male	brain

Quick Search: