Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63228287..63228797-chr17:63984242..63984796,2	MCF-7	breast:
2	chr17:63222163..63226262-chr17:63226769..63229619,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12943735	1.00[ASN][1000 genomes]
rs1514500	0.89[EUR][1000 genomes]
rs17688887	1.00[ASN][1000 genomes]
rs28451574	0.88[EUR][1000 genomes]
rs28525077	0.88[EUR][1000 genomes]
rs28542898	1.00[ASN][1000 genomes]
rs2869579	0.85[EUR][1000 genomes]
rs2869580	0.85[EUR][1000 genomes]
rs2869581	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869582	0.85[EUR][1000 genomes]
rs2869583	1.00[ASN][1000 genomes]
rs2869584	0.85[EUR][1000 genomes]
rs55686226	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55948933	0.85[EUR][1000 genomes]
rs59173947	0.89[EUR][1000 genomes]
rs59885956	1.00[ASN][1000 genomes]
rs61708414	0.89[EUR][1000 genomes]
rs62065135	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211964	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215502	0.85[EUR][1000 genomes]
rs73330465	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73994748	1.00[ASN][1000 genomes]
rs9900568	0.84[EUR][1000 genomes]
rs9900709	0.85[EUR][1000 genomes]
rs9904207	0.89[EUR][1000 genomes]
rs9907146	0.85[EUR][1000 genomes]
rs9914418	0.85[EUR][1000 genomes]
rs9914790	0.85[EUR][1000 genomes]
rs9916092	0.87[EUR][1000 genomes]
rs9916373	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916789	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63225400-63231600	Weak transcription	Osteobl	bone
2	chr17:63228000-63229200	Enhancers	Fetal Brain Male	brain
3	chr17:63228400-63229000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:63228400-63230600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr17:63228400-63232400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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