Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63204633..63206488-chr17:63207095..63209567,2	K562	blood:
2	chr17:63203039..63206876-chr17:63207747..63211148,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12943735	1.00[ASN][1000 genomes]
rs1514500	0.95[EUR][1000 genomes]
rs17688887	1.00[ASN][1000 genomes]
rs28451574	0.96[EUR][1000 genomes]
rs28525077	0.96[EUR][1000 genomes]
rs28542898	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869579	0.99[EUR][1000 genomes]
rs2869580	0.99[EUR][1000 genomes]
rs2869581	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869582	0.99[EUR][1000 genomes]
rs2869583	1.00[ASN][1000 genomes]
rs2869584	0.99[EUR][1000 genomes]
rs4790954	0.80[EUR][1000 genomes]
rs55904132	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55948933	0.99[EUR][1000 genomes]
rs59173947	0.95[EUR][1000 genomes]
rs59885956	1.00[ASN][1000 genomes]
rs61708414	0.95[EUR][1000 genomes]
rs62065135	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211964	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215502	0.99[EUR][1000 genomes]
rs73330465	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73994748	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9900568	0.97[EUR][1000 genomes]
rs9900709	0.99[EUR][1000 genomes]
rs9904207	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9907146	0.99[EUR][1000 genomes]
rs9914418	0.99[EUR][1000 genomes]
rs9914790	0.99[EUR][1000 genomes]
rs9916092	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9916373	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916789	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63181800-63209600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr17:63193800-63209800	Weak transcription	Dnd41	blood
4	chr17:63195000-63212400	Weak transcription	Pancreas	Pancrea
5	chr17:63195200-63209000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr17:63199000-63217200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr17:63199200-63211800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr17:63201200-63209600	Weak transcription	Gastric	stomach
9	chr17:63204000-63208600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr17:63205400-63209200	Weak transcription	Brain Hippocampus Middle	brain
11	chr17:63205800-63209000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr17:63205800-63215000	Weak transcription	Brain Substantia Nigra	brain
13	chr17:63207800-63209200	Strong transcription	Brain Anterior Caudate	brain
14	chr17:63208000-63212000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr17:63208200-63211000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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