Variant report

Variant	rs59173947
Chromosome Location	chr17:63215596-63215597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63215587..63218339-chr17:63218800..63221692,3	MCF-7	breast:
2	chr17:63215212..63215930-chr17:64161304..64161874,3	MCF-7	breast:
3	chr17:63215267..63216000-chr17:64161376..64162321,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10514867	0.87[ASN][1000 genomes]
rs1122078	0.82[EUR][1000 genomes]
rs11650746	0.87[ASN][1000 genomes]
rs11651062	0.87[ASN][1000 genomes]
rs11651081	0.81[ASN][1000 genomes]
rs11654243	0.81[ASN][1000 genomes]
rs11657250	0.87[ASN][1000 genomes]
rs11658655	0.87[ASN][1000 genomes]
rs11658673	0.81[ASN][1000 genomes]
rs11658736	0.81[ASN][1000 genomes]
rs11658773	0.81[ASN][1000 genomes]
rs1514500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960903	0.81[ASN][1000 genomes]
rs16960905	0.81[ASN][1000 genomes]
rs16960920	0.81[ASN][1000 genomes]
rs16960957	0.81[ASN][1000 genomes]
rs16961273	0.87[ASN][1000 genomes]
rs28451574	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28525077	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869578	0.81[ASN][1000 genomes]
rs2869579	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2869580	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2869581	0.95[EUR][1000 genomes]
rs2869582	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2869584	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4293415	0.81[ASN][1000 genomes]
rs4588019	0.87[ASN][1000 genomes]
rs4791223	0.81[ASN][1000 genomes]
rs4791227	0.81[ASN][1000 genomes]
rs55686226	0.95[EUR][1000 genomes]
rs55847515	0.93[ASN][1000 genomes]
rs55904132	0.89[EUR][1000 genomes]
rs55948632	1.00[ASN][1000 genomes]
rs55948933	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56102951	0.81[ASN][1000 genomes]
rs61534937	0.93[ASN][1000 genomes]
rs61708414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62065135	0.91[EUR][1000 genomes]
rs7211341	0.81[ASN][1000 genomes]
rs7211964	0.87[EUR][1000 genomes]
rs7215502	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7217524	0.81[ASN][1000 genomes]
rs7217548	0.93[ASN][1000 genomes]
rs7218518	0.93[ASN][1000 genomes]
rs7220710	0.87[ASN][1000 genomes]
rs7220751	0.80[EUR][1000 genomes]
rs7220949	0.87[ASN][1000 genomes]
rs7221103	0.87[ASN][1000 genomes]
rs73330407	0.80[ASN][1000 genomes]
rs73330465	0.89[EUR][1000 genomes]
rs73347632	0.81[ASN][1000 genomes]
rs73994757	0.93[ASN][1000 genomes]
rs73994758	0.93[ASN][1000 genomes]
rs73994761	0.93[ASN][1000 genomes]
rs73994763	0.93[ASN][1000 genomes]
rs73994764	0.93[ASN][1000 genomes]
rs73994765	0.93[ASN][1000 genomes]
rs73994766	0.93[ASN][1000 genomes]
rs8065438	0.93[ASN][1000 genomes]
rs8065444	0.93[ASN][1000 genomes]
rs8066063	0.93[ASN][1000 genomes]
rs8066072	0.93[ASN][1000 genomes]
rs8068016	0.93[ASN][1000 genomes]
rs8072543	0.81[ASN][1000 genomes]
rs908089	0.81[ASN][1000 genomes]
rs925674	0.81[ASN][1000 genomes]
rs9900568	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9900709	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9904207	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904247	0.80[EUR][1000 genomes]
rs9907146	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9907374	0.80[ASN][1000 genomes]
rs9914418	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9914790	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9916092	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9916373	0.99[EUR][1000 genomes]
rs9916789	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63199000-63217200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr17:63208800-63216400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr17:63209200-63218800	Weak transcription	Brain Anterior Caudate	brain
5	chr17:63213400-63216600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:63214200-63215800	Enhancers	HSMM	muscle
7	chr17:63214400-63216400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr17:63214600-63216400	Enhancers	HSMMtube	muscle
9	chr17:63215200-63216400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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