Variant report

Variant	rs9916373
Chromosome Location	chr17:63218565-63218566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63218520..63220309-chr17:63220365..63222193,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1122078	0.81[EUR][1000 genomes]
rs12943735	1.00[ASN][1000 genomes]
rs1514500	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs17688887	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs28451574	0.97[EUR][1000 genomes]
rs28525077	0.97[EUR][1000 genomes]
rs28542898	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869579	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2869580	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2869581	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869582	0.95[EUR][1000 genomes]
rs2869583	1.00[ASN][1000 genomes]
rs2869584	0.95[EUR][1000 genomes]
rs4790954	1.00[CEU][hapmap]
rs55686226	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55904132	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55948933	0.95[EUR][1000 genomes]
rs59173947	0.99[EUR][1000 genomes]
rs59885956	1.00[ASN][1000 genomes]
rs61708414	0.99[EUR][1000 genomes]
rs62065135	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211964	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215502	0.95[EUR][1000 genomes]
rs7220751	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs73330465	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73994748	1.00[ASN][1000 genomes]
rs8072603	1.00[CEU][hapmap]
rs9900568	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9900709	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9904207	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9904540	0.86[CEU][hapmap]
rs9907146	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9909394	0.81[CEU][hapmap]
rs9914418	0.95[EUR][1000 genomes]
rs9914790	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9916092	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9916789	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63209200-63218800	Weak transcription	Brain Anterior Caudate	brain
3	chr17:63216200-63218600	Enhancers	HSMM	muscle
4	chr17:63217000-63223400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr17:63217200-63219400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr17:63217400-63219400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:63217400-63219600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr17:63217400-63220800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr17:63217800-63218600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr17:63218000-63218600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr17:63218200-63218600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr17:63218200-63218800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:63218400-63218600	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links