Variant report

Variant	rs7211964
Chromosome Location	chr17:63243447-63243448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12943735	1.00[ASN][1000 genomes]
rs1514500	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17688887	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs28451574	0.85[EUR][1000 genomes]
rs28525077	0.85[EUR][1000 genomes]
rs28542898	1.00[ASN][1000 genomes]
rs2869579	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2869580	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2869581	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869582	0.83[EUR][1000 genomes]
rs2869583	1.00[ASN][1000 genomes]
rs2869584	0.83[EUR][1000 genomes]
rs4790954	1.00[CEU][hapmap]
rs55686226	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55904132	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55948933	0.83[EUR][1000 genomes]
rs59173947	0.87[EUR][1000 genomes]
rs59885956	1.00[ASN][1000 genomes]
rs61708414	0.87[EUR][1000 genomes]
rs62065135	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215502	0.83[EUR][1000 genomes]
rs7220751	0.92[CEU][hapmap]
rs73330465	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73994748	1.00[ASN][1000 genomes]
rs8072603	1.00[CEU][hapmap]
rs9900568	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9900709	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9904207	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9904540	0.85[CEU][hapmap]
rs9907146	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9909786	1.00[CHB][hapmap]
rs9914418	0.83[EUR][1000 genomes]
rs9914790	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9916092	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9916373	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916789	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63240400-63244200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:63240600-63245200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:63240800-63245200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr17:63241200-63245000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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