Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63284949..63286460-chr17:63288747..63290967,2	MCF-7	breast:
2	chr17:63284830..63287385-chr17:63556177..63558917,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168646	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11079562	0.86[EUR][1000 genomes]
rs11867807	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11871337	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12150224	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067622	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410529	1.00[ASN][1000 genomes]
rs57733055	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57840776	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371945	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209620	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211594	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225073	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845340	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845343	0.92[EUR][1000 genomes]
rs72845363	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845368	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72853506	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860086	1.00[ASN][1000 genomes]
rs8067645	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072284	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895320	0.97[EUR][1000 genomes]
rs9896135	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9903141	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910848	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911786	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63279600-63286800	Weak transcription	Right Atrium	heart
2	chr17:63280600-63285400	Weak transcription	Stomach Mucosa	stomach
3	chr17:63280600-63285800	Weak transcription	HUVEC	blood vessel
4	chr17:63281000-63286200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr17:63283800-63286000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr17:63283800-63286600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:63283800-63286600	Weak transcription	Fetal Heart	heart
8	chr17:63284000-63285800	Enhancers	Colonic Mucosa	Colon
9	chr17:63284000-63286600	Weak transcription	Lung	lung
10	chr17:63284000-63286600	Weak transcription	Spleen	Spleen
11	chr17:63284400-63286800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr17:63284800-63286600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr17:63284800-63290200	Weak transcription	Ovary	ovary
14	chr17:63285000-63286000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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