Variant report
| Variant | rs28410529 |
|---|---|
| Chromosome Location | chr17:63305835-63305836 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:63299896..63301503-chr17:63304895..63307476,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11867807 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11871337 | 1.00[ASN][1000 genomes] |
| rs12150224 | 1.00[ASN][1000 genomes] |
| rs12941447 | 0.90[EUR][1000 genomes] |
| rs2067622 | 1.00[ASN][1000 genomes] |
| rs56083437 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57293884 | 0.86[EUR][1000 genomes] |
| rs57733055 | 1.00[ASN][1000 genomes] |
| rs57840776 | 1.00[ASN][1000 genomes] |
| rs59371945 | 1.00[ASN][1000 genomes] |
| rs7209620 | 1.00[ASN][1000 genomes] |
| rs7211594 | 1.00[ASN][1000 genomes] |
| rs7225073 | 1.00[ASN][1000 genomes] |
| rs72845340 | 1.00[ASN][1000 genomes] |
| rs72845363 | 1.00[ASN][1000 genomes] |
| rs72845368 | 1.00[ASN][1000 genomes] |
| rs72853506 | 1.00[ASN][1000 genomes] |
| rs72860086 | 1.00[ASN][1000 genomes] |
| rs72860091 | 0.86[EUR][1000 genomes] |
| rs8067645 | 1.00[ASN][1000 genomes] |
| rs8072284 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs929515 | 0.94[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs985155 | 0.88[EUR][1000 genomes] |
| rs9895320 | 0.87[AFR][1000 genomes] |
| rs9896135 | 0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9903141 | 1.00[ASN][1000 genomes] |
| rs9903508 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9909786 | 1.00[ASN][1000 genomes] |
| rs9910848 | 1.00[ASN][1000 genomes] |
| rs9911786 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv482610 | chr17:63214370-63372334 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:63304200-63308800 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr17:63304400-63307600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
