Variant report
| Variant | rs985155 |
|---|---|
| Chromosome Location | chr17:63326063-63326064 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12941447 | 0.82[EUR][1000 genomes] |
| rs1860558 | 1.00[ASN][1000 genomes] |
| rs28410529 | 0.88[EUR][1000 genomes] |
| rs2869831 | 0.98[ASN][1000 genomes] |
| rs2869832 | 0.98[ASN][1000 genomes] |
| rs2869833 | 0.98[ASN][1000 genomes] |
| rs2869834 | 0.95[ASN][1000 genomes] |
| rs2869835 | 0.98[ASN][1000 genomes] |
| rs2904207 | 0.98[ASN][1000 genomes] |
| rs41318946 | 0.95[ASN][1000 genomes] |
| rs56083437 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs56756028 | 0.98[ASN][1000 genomes] |
| rs56763530 | 0.97[ASN][1000 genomes] |
| rs57123847 | 0.95[ASN][1000 genomes] |
| rs57293884 | 0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72860091 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs887488 | 0.98[ASN][1000 genomes] |
| rs929515 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs985154 | 0.98[ASN][1000 genomes] |
| rs9903508 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv482610 | chr17:63214370-63372334 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv575873 | chr17:63323581-63371880 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:63325800-63328400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
