Variant report

Variant	rs9903508
Chromosome Location	chr17:63308859-63308860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11867807	0.81[AFR][1000 genomes]
rs12941447	0.90[EUR][1000 genomes]
rs28410529	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56083437	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57293884	0.86[EUR][1000 genomes]
rs72860091	0.86[EUR][1000 genomes]
rs8072284	0.81[AFR][1000 genomes]
rs929515	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs985155	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9895320	0.82[AFR][1000 genomes]
rs9896135	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63307000-63310400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr17:63307400-63309400	Enhancers	Brain Germinal Matrix	brain
3	chr17:63307600-63309000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:63307800-63309000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr17:63307800-63309400	Enhancers	Fetal Lung	lung
6	chr17:63308600-63309400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr17:63308600-63313200	Weak transcription	Lung	lung
8	chr17:63308800-63309200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr17:63308800-63309400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr17:63308800-63309600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr17:63308800-63309800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr17:63308800-63310200	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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