Variant report

Variant	rs8072284
Chromosome Location	chr17:63277389-63277390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63274317..63276414-chr17:63276613..63279596,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11079562	0.85[EUR][1000 genomes]
rs11867807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11871337	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12150224	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067622	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410529	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57733055	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57840776	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59371945	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7209620	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211594	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225073	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845340	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845343	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845363	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72853506	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860086	1.00[ASN][1000 genomes]
rs8067645	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9895320	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9896135	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9903141	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9903508	0.81[AFR][1000 genomes]
rs9909786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910848	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911786	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63274000-63279400	Weak transcription	Right Atrium	heart
2	chr17:63274000-63279800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr17:63274600-63282800	Weak transcription	NH-A	brain
4	chr17:63274800-63279800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr17:63275000-63277400	Weak transcription	Stomach Mucosa	stomach
6	chr17:63275000-63279400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr17:63275000-63279400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr17:63275200-63277400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr17:63277200-63278000	Weak transcription	Spleen	Spleen

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